PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g08170
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 281aa    MW: 32003.7 Da    PI: 5.8373
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g08170genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000133052123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ Fs+   L  H++ H
  CA06g08170 30 YRCSFCKRGFSNAQALGGHMNIH 52
                9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.85E-62856No hitNo description
Gene3DG3DSA:3.30.160.604.4E-42854IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4683057IPR007087Zinc finger, C2H2
SMARTSM003550.00533052IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MIDPSNSENS NKILTWRSEE LLGLGQVKFY RCSFCKRGFS NAQALGGHMN IHRRDRARLR  60
EFSSDQNLLS LDINNSIYPP PLLANDDLLQ RDVSSPYDEA IICSSSKRRC VTYEDQKDHP  120
TSKVNYDHNP PHPPPAHNVS LQREVSSYDK TIICSPSKKP CVAYEDIDHP TYKVNYDYNP  180
LPHRPPSNDE SFQREVSSYD ETIISSSSKR PYDEESDHNR AVIIGDLLQL SLFKETPLIK  240
EARNRMEGQV ENKGIQLSPP SELDLELRLG MEQPKSSIEI *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755226e-75HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544776.10.0PREDICTED: uncharacterized protein LOC107844987
TrEMBLM1ARP56e-91M1ARP5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000287832e-90(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74631626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.19e-15C2H2 family protein